Cellular organelles

This chapter is vaguely relevant to Section E(ii) of the 2017 CICM Primary Syllabus, which expect the exam candidate to "describe ... cellular organelles and their properties". Organelles individually have never appeared in the written or vivas, but on occasion some trainees have been asked to draw a  labelled diagram of a mitochondrion and to discuss its function. From the clinical relevance of this exercise, it follows that there is a non-zero chance that at some point in the future the CICM primary candidates may be called upon to draw a Golgi apparatus or some sort of reticulum. If this nightmarish scenario should ever materialise, the bulk of this chapter will finally become useful. 

In summary:

  • Endoplasmic reticulum:
    • Structure
      • 3D mesh of tubular structures and sheets
      • All throughout the cytosol
      • "Rough" ER is covered in ribosomes, whereas "smooth" ER is not.
    • Function
      • Folding and modification of proteins 
      • Synthesis of phospholipids and steroids
      • Storage of calcium ions in the ER lumen  (sarcoplasmic reticulum)
  • Golgi apparatus
    • Structure:
      • Stacked membraeous cisternae which shed vescicles for transport 
    • Function:
      • Post-translation modification of proteins, including glycosylation, phosphorylation and polymerisation 
      • Prepare proteins for exocytosis
      • Synthesis of glycolipids and sphingomyelin
  • Nucleus
    • Structure
      • Outer and inner nuclear membrane with nuclear pores
      • Nucleoplasm separated into heterochromatin and euchromatin
      • A nucleolus where RNA and ribosomes are created
    • Function
      • Concentrates and maintains the genetic contents of the cell, which include the regulation of gene expression and replication.
  • Mitochondria
    • Structure
      • Outer membrane with pores and inner membrane without pores
      • Two separate compartments: intermembrane space or "outer compartment" and matrix space or inner compartment
      • Organisation of the inner membrane into cristae (a comb of many folds) which increases its surface area
    • Function
      • ATP synthesis functions, eg. oxidative phosphorylation
      • Regulatory and synthetic functions (eg, haem synthesis, calcium ion storage, urea cycle, haem and steroid synthesis)
      • Heat production
      • CO2 production
      • Production of reactive oxygen species
      • Apoptosis
  • Lysosome
    • Structure
      • Membrane-bound compartment in the cell, the last member of the endocytic pathway - equivalent to vacuoles of protozoa
      • Usually have acidic internal pH and contain degradative enzymes
    • Function
      • Terminal destination for endocytosed material
      • main function is degradation and catabolism

An excellent published resource for this topic is Tour of Organelles Through the Electron Microscope, a reprinting of a classic Harvey lecture by Keith R. Porter (Satir, 2005).  That's probably already more than you need to know for the CICM examination system, no matter how unrealistic and deranged it may become with the coming years. However, if "more than you need to know" is still not enough, you may wish to avail yourself of Cellular Organelles and the Extracellular Matrix by Edward and Neville Bittar (Volume 3 from the Principles of Medical Biology, 1996). In this book, each organelle gets its own chapter.

Endoplasmic reticulum

Charles Garnier is said to have first noticed the ER on light microscopy, but generally, the characterisation and the name "endoplasmic reticulum" were crafted by Porter et al. (1945). The investigators reported the presence of a "lace-like reticulum" which Keith Porter later (1953) described as "endoplasmic reticulum" because of his observation that "this component is absent from the thinner (ectoplasmic) margins of the cell and appears instead to occupy the central or endoplasmic portions of the cytoplasm". 

endoplasmic reticulum from Satir, 2005Porter himself, many years hence in his illustrious career confessed that these things got named in a fairly haphazard fashion by people like himself who had no idea of what they were looking at or what its function might be. The complexity of this three-dimensional structure also is not apparent from thinly sliced osmium-fixed slices. What appears as a "lace-like reticulum" in cross-section is in fact a 3D mesh of tubular structures and sheets.

An excellent rendering of this structure is offered by Bruce Blausen via Wikipedia. Unlike virtually every other image in the cellular physiology section, this one is licensed for use by any well-meaning author. The image gives an accurate impression of the endoplasmic reticulum network as a complex and large-scale network which extends to virtually all organelles in the cell. As you can see, it  is everywhere in the cell, wrapping around everything and contacting every organelle. It is like the circulatory system of the cell.


From the constant references to the ER as a tube or a network of tubes, one might conclude that there is an inside and an outside to it. In fact, the inside part of this complex network of tubes appears to form one continuous space. This was demonstrated with some elegant experiments. For example, by injecting Purkinje cells with a highly lipophilic dye which should really stay between the layers of a lipid bilayer, Terasaki et al (1994) were able to track its spread throughout the endoplasmic reticulum, demonstrating that all the membranes and cavities form one complicated and continuous network. 

As far as its function goes, the endoplasmic reticulum can be summarised as "everything". According to an excellent review by Voeltz et al (2002), its functions include:

  • Transport of large proteins (which otherwise would have difficulty diffusing around)
  • Integration of proteins into the ER membrane
  • Folding and modification of proteins in the ER lumen
  • Synthesis of phospholipids and steroids
  • Storage of calcium ions in the ER lumen and their regulated release into the cytosol (i.e. the sarcoplasmic reticulum of muscle cells is a modified endoplasmic reticulum)

One generally hears about "rough" and "smooth" reticulum, which is a classification based on electron microscope appearance. Rough reticulum is said to appear rough because of the presence of multiple ribosomes. Functionally, cells which synthesize steroids or metabolize hydrophobic substances (eg. liver cells) are rich in smooth reticulum, whereas cells expected to fabricate large amounts of protein are rich in rough reticulum. 

Golgi apparatus

If you love the Golgi body enough to get it on a T-shirt, you'd probably also enjoy reading the Farquhar article (1981) about this structure, from whence this image comes from. 

Golgi apparatus from Farquhar et al

In the extremely unlikely case that anybody ever asks for an ICU trainee to discuss this thing, that will probably come in the form of a "describe the structure and function" question. At a basic level, the Golgi apparatus is a processing and distribution area for proteins and lipids. Structurally, there are discrete entry and exit points for the raw substrate and finished products, and there is a central processing/packaging area which does all the hard work.


If one were ever in a situation where one were for some reason required to draw one of these things, essential structural components for one to label would include:

  • Cis face: the area which usually interfaces with the endoplasmic reticulum
  • Cisternae, the hollow components of the apparatus wherein lipid or protein products are combined or concentrated
  • Trans face: the area which produces a constant stream of vesicles containing finished product
  • Vesicles: for transport to their destination 


  • Modify proteins synthesised by the endoplasmic reticulum
  • Perform post-translation modification of proteins, including:
    • Glycosylation
    • Phosphorylation
    • Polymerisation (eg. where proteins are added to glucosaminoglycans to create proteoglycans)
  • Prepare proteins for exocytosis
  • Synthesis of non-protein cell components:
    • Synthesis of glycolipids and sphingomyelin
  • In cells which do not have lysosomes, the Golgi apparatus sends proteins to the vacuole.

Structure of the cell nucleus

The nucleus is so central to the existence of the cell that often it is not included in the list of intracellular organelles, as if to separate it from the plebs. It is undoubtedly an important member of the intracellular contents, and worth discussing. For something formal,  Lamond & Earnshaw (1998) have an excellent article available through ResearchGate. In summary, the main function of the cell nucleus is to concentrate and maintain the genetic contents of the cell, which include the regulation of gene expression and replication.

structure of cell nucleus

The image comes from an online clipart database, and it suits the purposes of this summary, though it has no reference and is attributed to an artist know only as "s m". An informative example from real life is below: this is the cell nucleus of a plasma cell from the bone marrow of a guinea pig, which has all the important elements on show.

cell nucleus electron microscope image

If one were ever called upon to draw a labelled diagram of this thing, it would be important to label it with the following components:

  • Outer nuclear membrane, which is continuous with the endoplasmic reticulum
  • Inner nuclear membrane, which wraps around the nucleoplasm and which contains pores (openings into the outer membrane)
  • Nuclear pores, which are protein-bounded openings between the membranes
  • Nucleoplasm, a slightly more viscous version of the cytoplasm which contains all the intranuclear material:
    • Condensed chromatin (heterochromatin), which contains the bulk of the genetic material
    • Dispersed chromatin (euchromatin)
    • Interchromosomal domains (the spaces between chromatin)
    • The nucleolus, a body formed around the ribosomal DNA (rDNA) repeats which produces ribosomes and ribosomal RNA.

Another trivial-sounding factoid about the nucleus is its mechanical rigidity. Unlike the rest of the cell, which is a fairly squishy sack of gunk, the nucleus is approximately 5 to 10 times stiffer than the surrounding cytoskeleton and tends to be the most important determinant of whether or not a cell can fit through a gap of some sort (Lammerding, 2011). This might not sound like it means anything, but in fact it is probably one of the reasons that red blood cells do not have a nucleus - it allows them to deform effortlessly and squeeze through tight capillaries, which with a nucleus they might not be able to do quite so easily.

Structure of the  mitochondria

Most of the times, when one looks at this in a textbook, one is generally greeted with an image of a bean-shaped structure, usually brown in colour for some reason, and sectioned to reveal the characteristic cristae. These diagrams are usually approximated from electron microphotography by early authors such as Palade (1952), or Plummer & Bredl whose image can be seen below (misappropriated from Cellular Organelles by Bittar, David Drake Tyler's chapter). 


That is a mitochondrion from a tibial anterior muscle cell of a Great Dane, magnified  66,000 times. With this sort of image, it is possible to discern most of the main structural elements of the mitochondrion. To show these off, the temptation is great to offer a high-quality 3D rendered professional image of this organelle. However that is probably going to be unhelpful. In the previous CICM part 1 exams, trainees have been asked to draw this thing, which means they should probably have a lower artistic benchmark to aim for. Ideally, something relatively scrappy and hand-drawn. Fortunately, Tyler also gives us one of those:

mitochondrion from Tyler, 1995

What minimum labelled structures would the college have wanted as a part of this diagram?  In Question 18 from the first paper of 2016, the only structural elements listed by the college examiners were "double membrane structure with cristae and enzymes lining the membrane and within the matrix". That's probably not enough.  If we were to use Tyler's chapter as the benchmark, you'd have to at least include the following:

  • Two membranes
    • Outer membrane with pores
    • Inner membrane without pores
    • These membranes meet at contact sites (area where membrane lipids and prroteins may be exchanged with other organelles)
  • Two separate compartments
    • Intermembrane space or "outer compartment"
    • Matrix space or inner compartment
  • Organisation of the inner membrane into cristae (a comb of many folds) which increases its surface area
  • Molecular components
    • ATP synthase molecules on the inner surface of the inner membrane 
    • Mitochondrial ribosomes in the inner compartment
    • Mitochondrial DNA in the inner compartment
    • Electron dense-granules in the inner compartment (composed of RNA)

The function of mitochondria being an entire massive topic all of its own, one might limit oneself to some abbreviated statements, such as:

  • ATP synthesis functions, including:
    • Citric acid cycle
    • Electron transport chain
    • Beta-oxidation of long chain fatty acids
  • Regulatory and synthetic functions
    • Haem synthesis
    • Calcium ion storage
    • Urea cycle
    • Haem synthesis
    • Steroid synthesis
  • As a byproduct of these functions
    • Heat production
    • CO2 production
    • Production of reactive oxygen species
  • Non-metabolic roles
    • Apoptosis


As the name might imply, these small bodies are dedicated to the task of lysis.  If you need a detailed breakdown of this matter (pun totally intended) Luzio et al (2007) have you covered. In brief, lysosomes are a membrane-bound compartment in the cell, the last member of the endocytic pathway. Endocytosis, the process of engulfing things into the cell, produces pockets of material inside the cytosol which are bounded by the cell membrane, of which the lysosomes are one species.  Mukherjee et al (1997) is probably the most lucid explanation of what this is for and how it works. In brief:

  • Lysosomes are the terminal degradation compartment of endocytosis, and the destination for intracellular material destined for autophagy
  • They are distinguished from endosomes by the lack of mannose-6-phosphate receptors.
  • They usually have an acidic internal pH and contain degradative enzymes

Lysosomes are sufficiently morphologically diverse that offering an electron microscopy image of one would not be useful (not that it ever is), because their appearance differs significantly depending on their contents. One can compare them to the vacuoles of yeasts and protists, which have no lysosomes but where vacuoles fulfil the same role. In the same way that the contents of an amoebas vacuole reflects the random bunch of stuff it ate in the last half an hour, so does the lysosome contain the proteins and products of degradation which reflect the recent catabolic history of the cell.


Satir, Peter. "Tour of organelles through the electron microscope: A reprinting of Keith R. Porter's classic Harvey Lecture with a new introduction." The Anatomical Record Part A: Discoveries in Molecular, Cellular, and Evolutionary Biology: An Official Publication of the American Association of Anatomists 287.2 (2005): 1184-1204.

Demaurex, Nicolas. "pH Homeostasis of cellular organelles." Physiology 17.1 (2002): 1-5.

Palade, George E. "An electron microscope study of the mitochondrial structure." Journal of Histochemistry & Cytochemistry 1.4 (1953): 188-211.

Garnier, Charles. Les filaments basaux des cellules glandulaires. Note préliminaire. Berger-Levrault, 1897.

Porter, Keith R., Albert Claude, and Ernest F. Fullam. "A study of tissue culture cells by electron microscopy: methods and preliminary observations." Journal of Experimental Medicine81.3 (1945): 233-246.

Porter, Keith R. "Observations on a submicroscopic basophilic component of cytoplasm." Journal of Experimental Medicine97.5 (1953): 727-750.

Blausen.com staff (2014). "Medical gallery of Blausen Medical 2014". WikiJournal of Medicine 1 (2). DOI:10.15347/wjm/2014.010.ISSN 2002-4436. - Own work

Voeltz, Gia K., Melissa M. Rolls, and Tom A. Rapoport. "Structural organization of the endoplasmic reticulum." EMBO reports 3.10 (2002): 944-950.

Terasaki, Mark, et al. "Continuous network of endoplasmic reticulum in cerebellar Purkinje neurons." Proceedings of the National Academy of Sciences 91.16 (1994): 7510-7514.

Palade, George E. "The fine structure of mitochondria." The Anatomical Record 114.3 (1952): 427-451.

Farquhar, Marilyn Gist, and George E. Palade. "The Golgi apparatus (complex)-(1954-1981)-from artifact to center stage." J cell biol 91.3 (1981): 77s-103s.

Luzio, J. Paul, Paul R. Pryor, and Nicholas A. Bright. "Lysosomes: fusion and function." Nature reviews Molecular cell biology 8.8 (2007): 622.

Mukherjee, Sushmita, Richik N. Ghosh, and Frederick R. Maxfield. "Endocytosis." Physiological reviews 77.3 (1997): 759-803.

Mironov, A. A., et al. "Current concept of structure and function of the Golgi apparatus. On the 100-anniversary of the discovery by Camillo Golgi.Tsitologiia 40.6 (1998): 483-496.

Lamond, Angus I., and William C. Earnshaw. "Structure and function in the nucleus." Science 280.5363 (1998): 547-553.

Lammerding, Jan. "Mechanics of the nucleus." Comprehensive physiology 1.2 (2011): 783.